Publications & manuscripts
Selected work
Peer-reviewed articles, manuscripts in progress, open-source software, and datasets.
Publications & manuscripts
Peer-reviewed articles, manuscripts in progress, open-source software, and datasets.
Articles in peer-reviewed journals
Linking hierarchical assembly rules and diversity patterns of soil fungi in primary succession. Mori, A., Nishizawa, K., Uchida, M., Naka, M., Masumoto, S., Matsuoka, S., Xu, X., Adaimé, M.-É. Oikos In press
Initial results from a Trans-Amazon Drilling Project core from the Acre Basin of Brazil. Fritz, S.C., Sawakuchi, A.O., Noren, A., … Adaimé, M.-É., et al. Scientific Drilling, 35: 127–157.
Pollen morphology, deep learning, phylogenetics, and the evolution of environmental adaptations in Podocarpus. Adaimé, M.-É., Urban, M.A., Kong, S., Jaramillo, C., Punyasena, S.W. New Phytologist, 247: 1460–1473.
Deep learning approaches to the phylogenetic placement of extinct pollen morphotypes. Adaimé, M.-É., Kong, S., Punyasena, S.W. PNAS Nexus, 3(1): pgad419.
Postglacial palaeoenvironmental reconstruction of the Fury and Hecla Strait region (Nunavut) inferred from microfossils and geochemical proxies. Adaïmé, M.-É., Pienitz, R., Legendre, P., Antoniades, D. Journal of Quaternary Science, 37: 944–958.
Remote sensing of lake sediment core particle size using hyperspectral image analysis. Ghanbari, H., Jacques, O., Adaimé, M.-É., Gregory-Eaves, I., Antoniades, D. Remote Sensing, 12: 3850.
In review
Deep learning of fossil pollen morphology reveals 25,000 years of ecological change in East African grasslands. Adaimé, M.-É., Kong, S., Urban, M.A., Punyasena, S.W., Street-Perrott, A., Verschuren, D. PNAS Under review
Manuscripts in preparation
Deep learning techniques corroborate evidence for earliest C4 grasslands in Early Miocene East Africa. Lloyd, B.A., Adaimé, M.-É., Punyasena, S.W., Gallaher, T.J., Kong, S., Strömberg, C.
Developmental lability or convergent evolution? The complex origin of fruit-like structures in conifers. Khan, R., Adaimé, M.-É., Leslie, A.B., Hill, R.S., Jordan, G.J., Dörken, V.M., Biffin, E.
Millennia of Environmental Change in the Coastal Margin of the Arctic's Last Ice Area. Adaimé, M.-É., Bouchard, F., Antoniades, D., Couture, R.-M., Fortier, D., Vincent, W.F.
Software & data releases
Computational Tools for Quantifying Poaceae Pollen Diversity and Inferring Photosynthetic Pathway (C3 or C4) from Superresolution Images (v2.0.0). Adaimé, M.-É., Kong, S., Punyasena, S.W. Zenodo.
Pollen of Podocarpus (Podocarpaceae) II: Airyscan confocal superresolution images. Punyasena, S.W., Adaimé, M.-É., Jaramillo, C. University of Illinois Urbana-Champaign.
SR-SIM superresolution structured illumination microscopy images of fossil and modern pollen of Poaceae. Punyasena, S.W., Urban, M.A., Adaimé, M.-É., Romero, I.C. University of Illinois Urbana-Champaign.
Integrating Molecular Phylogenetic Data and CNN-Derived Morphology for the Evolutionary Placement of Unknown Pollen Types (v1.0.0). Adaimé, M.-É., Kong, S., Punyasena, S.W. Zenodo.
Pollen of Podocarpus (Podocarpaceae): Airyscan confocal superresolution images. Punyasena, S.W., Urban, M.A., Adaimé, M.-É., Romero, I., Jaramillo, C. University of Illinois Urbana-Champaign.